MRIQC: individual T1w report

Summary

  • BIDS filename: sub-6037_ses-1_T1w.
  • Date and time: 2024-04-11, 23:11.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.4192801205640842
cnr3.1363093499698924
efc0.5936609630609064
fber1120.3647334488137
fwhmavg3.2934866666666665
fwhmx3.22931
fwhmy3.50912
fwhmz3.14203
icvscsf0.19041736054963215
icvsgm0.4228902738826465
icvswm0.38669236556772135
inumed1.2804064750671387
inurange0.28603308200836186
qi10.0
qi20.017480184778534087
rpvecsf24.48949488025363
rpvegm12.04179591022994
rpvewm16.342229208328934
sizex176
sizey256
sizez256
snrcsf3.466959386163372
snrgm8.839560116554908
snrtotal9.911592714218308
snrwm17.428258639936644
snrdcsf43.23970214815105
snrdgm72.39218153622183
snrdtotal73.60195836881759
snrdwm105.1739914220799
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1832.4692633640311
summarybgmad6.229071929596364
summarybgmean12.914395661540881
summarybgmedian8.402890339493752
summarybgn2061120.0
summarybgp050.0
summarybgp9529.41011618822813
summarybgstdv22.83782034493177
summarycsfk1.5172149762017488
summarycsfmad92.93775318957775
summarycsfmean384.0770639330302
summarycsfmedian411.1254146769643
summarycsfn9695.0
summarycsfp05157.39733991250398
summarycsfp95536.3284807354212
summarycsfstdv118.57774071708383
summarygmk-0.09059200551013724
summarygmmad77.11591048840297
summarygmmean690.4026556781898
summarygmmedian688.3087573423982
summarygmn17058.0
summarygmp05563.5930589236319
summarygmp95823.5476754296571
summarygmstdv77.86457385098169
summarywmk0.5843664209443689
summarywmmad53.570018594528726
summarywmmean1000.0221271802735
summarywmmedian999.9999696686864
summarywmn239709.0
summarywmp05905.3274051770568
summarywmp951093.6081680506468
summarywmstdv57.37795751508126
tpmoverlapcsf0.1645626723766327
tpmoverlapgm0.453829824924469
tpmoverlapwm0.519833505153656
wm2max0.36484346613963503
AcquisitionDuration318.417
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime12:12:49.720000
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHead_32
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime6.1e-06
EchoTime0.0024
FlipAngle9
ImageCommentsProject:earlypsychosis
ImageOrientationPatientDICOM[0.0167244, 0.99986, 2.77888e-08, 0.0890365, -0.00148927, -0.996027]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.263
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InversionTime0.9
MRAcquisitionType3D
MTStateTrue
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelAcquisitionTechniqueGRAPPA
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseResolution1
PixelBandwidth320
ProtocolNameMPRAGE_SAG_1mm_iPAT2
PulseSequenceDetails%SiemensSeq%\tfl
PulseSequenceName*tfl3d1_16ns
ReceiveCoilActiveElementsHEA;HEP
ReceiveCoilNameHead_32
ReconMatrixPE256
RefLinesPE24
RepetitionTime2.3
ScanOptionsIR
ScanningSequenceGR\IR
SequenceVariantSK\SP\MP
SeriesDescriptionMPRAGE_SAG_1mm_iPAT2
SeriesNumber10
ShimSetting[2650, 5330, -7417, 446, 4, -641, -49, -281]
SliceThickness1
SoftwareVersionssyngo MR XA30
StationNameMRC35427
TxRefAmp277.546
md5sum673f581a294527a823a875f664bc6200
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.